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PDB ID Examples: 3ert, 1ttu, 1naq
Get ID by keyword
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Sequence name
Amino acid sequence (using one letter codes)
Version: SPPIDER I SPPIDER II
Tradeoff between Sensitivity and Specificity 0.1 (Best recall) 0.2 0.3 0.4 0.5 (Balanced) 0.6 0.7 0.8 0.9 1.0 (Best precision)
Define interaction sites using RSA change threshold Absolute (Ų) Relative (%)
Tradeoff between Sensitivity and Specificity 0.1 (Best recall) 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 (Best precision)
Generate a new PDB file with B-factors replaced by prediction encoded as Classification Regression and keep the rest chains (if any) in the file
Append solvent accessibility prediction results (from SABLE)
Print results in the CASP format
Present found interfaces as
As summary Each interface separately